Genome‐Wide Association Study Confirms SNPs in SNCA and the MAPT Region as Common Risk Factors for Parkinson Disease

TL Edwards, WK Scott, C Almonte, A Burt… - Annals of human …, 2010 - Wiley Online Library
TL Edwards, WK Scott, C Almonte, A Burt, EH Powell, GW Beecham, L Wang, S Züchner
Annals of human genetics, 2010Wiley Online Library
Parkinson disease (PD) is a chronic neurodegenerative disorder with a cumulative
prevalence of greater than one per thousand. To date three independent genome‐wide
association studies (GWAS) have investigated the genetic susceptibility to PD. These
studies implicated several genes as PD risk loci with strong, but not genome‐wide
significant, associations. In this study, we combined data from two previously published
GWAS of Caucasian subjects with our GWAS of 604 cases and 619 controls for a joint …
Summary
Parkinson disease (PD) is a chronic neurodegenerative disorder with a cumulative prevalence of greater than one per thousand. To date three independent genome‐wide association studies (GWAS) have investigated the genetic susceptibility to PD. These studies implicated several genes as PD risk loci with strong, but not genome‐wide significant, associations.
In this study, we combined data from two previously published GWAS of Caucasian subjects with our GWAS of 604 cases and 619 controls for a joint analysis with a combined sample size of 1752 cases and 1745 controls. SNPs in SNCA (rs2736990, p‐value = 6.7 × 10−8; genome‐wide adjusted p = 0.0109, odds ratio (OR) = 1.29 [95% CI: 1.17–1.42] G vs. A allele, population attributable risk percent (PAR%) = 12%) and the MAPT region (rs11012, p‐value = 5.6 × 10−8; genome‐wide adjusted p = 0.0079, OR = 0.70 [95% CI: 0.62–0.79] T vs. C allele, PAR%= 8%) were genome‐wide significant. No other SNPs were genome‐wide significant in this analysis. This study confirms that SNCA and the MAPT region are major genes whose common variants are influencing risk of PD.
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